What about the balance of my post. Unless I know exactly what you are missing and the settings you used, there's not much I can do.
Don
I had to take sometime to put it together it took me almost 2 hours to do and I ran into some bugs trying to get em. One causing the wrong day to show up at certain airports such as KDTW which I noted mostly. Also for some strange reason I am getting crashes when I look at the time table through the "Traffic and Parking Analyser" (you can reproduce this by Clock in the Time Table Function and clicking on another airport (The Crash is seemingly random so you may have to click through more airports until you get it) The crash was detected when I used my Time Table Data here. Along with the previously mention Bug in the Regular Time Table where there's no Flights to a certain airport, It wreck havoc on trying to produce the data here.
Anyway the missing Flights are attached here All Flights are Daily unless noted:
Col 1 is From
Col 2 is To
Col 3 is Flight Number
Col 4 is Days Believed to be Missing as shown on the Time Table in the Program. (It may be different as a bug can make it show the wrong days and it affected KDTW mostly) (1 is Mon-7 is Sun)
Col 5 is Additional Notes like Days the Flight Runs. Rather or not it's a Red Eye (Next day arrival but I called them Red Eye even though they are probably not). Bug Notes, and other items that may be noteworthy. The numbers in there indicate affected days or days the flight runs on. (1 is Mon-7 is Sun)
They may be other missing flights I couldn't find as some only operate a few days a week ad all those flights could be missing and be a missing flight number from the time table. I caught a few of these but some may be hiding from me though I am sure I got at least 99% of them. I noted the flights that I did manage to spot in the file.
The Airport that seems to have the most missing FPs by a seemingly large margin is KFLL which is their main hub.It would be a good place to start looking for the cause at since it was the cause of many missing flight numbers and airports as noted above.
Hopefully you can find a pattern and fix the bugs.

