The easy way to avoid this problem is to extrude outwards, not inwards.
You can achieve the shape in your example this way by having all three side polys positioned at the innermost location and extrude the two polygons outwards, creating the desired shape without deleting and drawing polygons.
You can achieve the shape in your example this way by having all three side polys positioned at the innermost location and extrude the two polygons outwards, creating the desired shape without deleting and drawing polygons.









